trackList.json备份模板

1.挂上bam(名下没有功能注释？）
{
   "formatVersion" : 1,
   "tracks" : [
      {
         "category" : "Reference sequence",
         "chunkSize" : 20000,
         "key" : "Reference sequence",
         "label" : "DNA",
         "seqType" : "dna",
         "storeClass" : "JBrowse/Store/Sequence/StaticChunked",
         "type" : "SequenceTrack",
         "urlTemplate" : "seq/{refseq_dirpath}/{refseq}-"
      },
      {
         "compress" : 0,
         "key" : "Gene models",
         "label" : "genes",
         "storeClass" : "JBrowse/Store/SeqFeature/NCList",
         "style" : {
            "arrowheadClass" : "arrowhead",
            "className" : "transcript",
            "subfeatureClasses" : {
               "CDS" : "transcript-CDS",
               "exon" : "hidden"
            }
         },
         "trackType" : "CanvasFeatures",
         "type" : "CanvasFeatures",
         "urlTemplate" : "tracks/genes/{refseq}/trackData.json"
      },
       {
         "label" : "Leaf",
         "storeClass" : "JBrowse/Store/SeqFeature/BAM",
         "key" : "Leaf",
         "urlTemplate" : "../../bam_CNP0000715/A.sorted.bam",
         "type" : "JBrowse/View/Track/Alignments2"
      }
      
   ]
}
 

###已经挂上bam，并且颜色为蓝色高度调整后的版本
{
  "formatVersion": 1,
  "plugins": [
    {
      "name": "HideTrackLabels"
    }
  ],
  "tracks": [
    {
      "category": "Reference sequence",
      "chunkSize": 20000,
      "key": "Reference sequence",
      "label": "DNA",
      "seqType": "dna",
      "storeClass": "JBrowse/Store/Sequence/StaticChunked",
      "type": "SequenceTrack",
      "urlTemplate": "seq/{refseq_dirpath}/{refseq}-"
    },
    {
      "compress": 0,
      "key": "Gene models",
      "label": "genes",
      "category": "Gene models",
      "storeClass": "JBrowse/Store/SeqFeature/NCList",
      "style": {
        "arrowheadClass": "arrowhead",
        "className": "transcript",
        "subfeatureClasses": {
          "CDS": "transcript-CDS",
          "exon": "hidden"
        }
      },
      "trackType": "CanvasFeatures",
      "type": "CanvasFeatures",
      "urlTemplate": "tracks/genes/{refseq}/trackData.json"
    },
{
  "label": "Leaf",
  "key": "Leaf",
  "category": "RNA-Seq/CNP0000715",
  "storeClass": "JBrowse/Store/SeqFeature/BigWig",
  "urlTemplate": "../../bam_CNP0000715/A.bw",
  "type": "JBrowse/View/Track/Wiggle/XYPlot",
  "style": {
    "pos_color": "#1167d7",
    "neg_color": "#c92a2a",
    "height": 70
  },
  "min_score": 0,
  "max_score": 70,
  "height": 70,
  "maxHeight": 70,
  "autoscale": "local"
}
  ],
  "trackSelector": {
    "type": "Hierarchical",
    "sortHierarchical": true
  },
  "defaultTracks": "DNA,genes",
  "defaultLocation": "chromosome1:1..5000",
  "classicMenu": true,
  "alwaysOnTracks": "DNA,genes",
  "location_box": true,
  "share_link": true,
  "aboutThisBrowser": {
    "title": "Genome Browser"
  },
  "highResolutionMode": 2,
  "show_tracklist": true,
  "show_nav": true,
  "show_overview": true,
  "show_menu": true
}