hmmer安装

# Installing hmmer (http://hmmer.org/)
#wget http://eddylab.org/software/hmmer/hmmer-3.3.2.tar.gz -P ~/software/
wget http://eddylab.org/software/hmmer/hmmer.tar.gz
tar zxf hmmer.tar.gz
cd hmmer-3.4/
./configure --prefix=/opt/biosoft/hmmer-3.4 && make -j 4 && make install
cd .. && rm -rf hmmer-3.4
echo 'PATH=/opt/biosoft/hmmer-3.4/bin/:$PATH' >> ~/.bashrc
source ~/.bashrc
cd /opt/biosoft/hmmer-3.4

 panther报错解决

1.修改

InterProScan 配置文件

打开 interproscan.properties 文件，确认 HMMER 的路径配置是否正确。例如：

properties

複製程式碼

binary.hmmer33.hmmsearch.path=/path/to/hmmer-3.4/hmmsearch

确保 /path/to/hmmer-3.4/hmmsearch 是 HMMER 3.4 的实际安装路径。

如果您的 HMMER 安装在 /usr/local/bin/，可以将其设置为：

properties

複製程式碼

binary.hmmer33.hmmsearch.path=/usr/local/bin/hmmsearch

检查其他相关路径，例如：

properties

複製程式碼

binary.hmmer33.hmmscan.path=/usr/local/bin/hmmscan binary.hmmer33.path=/usr/local/bin

2.清理内存

rm -rf $HOME/.interproscan/cache/*

3. 对panther数据重新压缩

hmmpress data/panther/15.0/panther.hmm