运行Gmap由CDS得到gff3

1.CDS和genome的序列名简洁，不要出现|等
2.将CDS序列统一为一行序列一行序列名
3.在运行 GMAP 前，需要先用 gmap_build 对基因组文件构建索引
gmap_build -d A.hirsutus.genome A.hirsutus.genome.fasta

#用测试数据执行
gmap -d A.hirsutus.genome -f gff3_gene -t 8 50.CDS.fasta > 50.CDS.gff3

#可能实际运行了下面的命令

 gmap.avx2 -d A.hirsutus.genome -f gff3_gene -t 8 A.hirsutu.oneline.CDS.fasta

#没能建立结构gff3索引的数据

No paths found for Arthir179
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####文件保存地址

156  /home/train/hd/ArHi